ProteomeCommons.org IO Framework is a proper Java
framework for handling spectra and peak lists. The
framework can read and write to a number of
different spectra and peak list formats, and it
provides a simple, intuitive Java object model for
working with spectra or peak lists. All classes
support two methods of handling peak list and
spectrum data: in-memory or stream. The goal of
this framework is to support all the popular MS
and MSMS data formats, and to eliminate any time
or effort involved in figuring out how to read and
write peak list or spectrum files.
