SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for human-sized genomes. The program is specially designed to assemble Illumina short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. SOAPdenovo2 is the successor of SOAPdenovo. Cite the paper published in GigaScience (see website below) if you want to cite SOAPdenovo2.
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README.md | 1.2 KB | 2015-03-18 17:52 | 45 |
README.md | 1.2 KB | 2015-03-17 12:47 | 12 |
SOAPec_src_v2.03.tgz | 105.0 KB | 2014-05-29 11:48 | 59 |
SOAPec_bin_v2.03.tgz | 2.5 MB | 2014-05-29 11:47 | 63 |
SOAPdenovo2-bin-r240-mac.tgz | 643.2 KB | 2013-12-23 12:28 | 52 |
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README.md | 1.2 KB | 2015-03-18 17:52 | 45 |
SOAPdenovo2 | |||
README.md | 1.2 KB | 2015-03-17 12:47 | 12 |
bin | |||
r240 | |||
SOAPdenovo2-bin-r240-mac.tgz | 643.2 KB | 2013-12-23 12:28 | 52 |
SOAPdenovo2-bin-LINUX-generic-r240.tgz | 2.0 MB | 2013-07-15 16:43 | 90 |
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SOAPdenovo2-bin-LINUX-generic-r239.tgz | 2.0 MB | 2013-06-26 11:10 | 19 |
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SOAPdenovo2-bin-LINUX-corei3-r238.tgz | 850.9 KB | 2013-06-14 13:02 | 9 |
SOAPdenovo2-bin-LINUX-generic-r238.tgz | 2.0 MB | 2013-06-13 18:03 | 18 |
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SOAPdenovo2-bin-MACOS-generic-r223.tgz | 826.3 KB | 2012-12-28 16:57 | 11 |
SOAPdenovo2-bin-LINUX-generic-r223.tgz | 3.0 MB | 2012-12-28 16:57 | 19 |
SOAPdenovo2-bin-LINUX-corei3-r223.tgz | 3.0 MB | 2012-12-28 16:56 | 14 |
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SOAPdenovo2-src-r240-mac.tgz | 2.2 MB | 2013-12-23 12:26 | 36 |
SOAPdenovo2-src-r240.tgz | 1.5 MB | 2013-07-15 16:45 | 242 |
r239 | |||
SOAPdenovo2-src-r239.tgz | 1.5 MB | 2013-06-26 11:07 | 17 |
r238 | |||
SOAPdenovo2-src-r238.tgz | 1.5 MB | 2013-06-14 13:01 | 11 |
r224 | |||
SOAPdenovo2-src-r224.tar.gz | 1.3 MB | 2013-05-27 23:30 | 12 |
r223 | |||
SOAPdenovo2-src-r223.tgz | 1.3 MB | 2013-04-02 14:59 | 41 |
ErrorCorrection | |||
SOAPec_src_v2.03.tgz | 105.0 KB | 2014-05-29 11:48 | 59 |
SOAPec_bin_v2.03.tgz | 2.5 MB | 2014-05-29 11:47 | 63 |
SOAPec_src_v2.02.tgz | 107.8 KB | 2013-03-11 16:02 | 11 |
SOAPec_v2.02.tgz | 2.4 MB | 2013-03-05 13:02 | 19 |
SOAPec_v2.01.tar.gz | 2.4 MB | 2013-01-08 16:58 | 64 |
ErrorCorrection.tgz | 721.6 KB | 2012-10-24 11:13 | 9 |
Prepare | |||
Prepare-src-v2.0.tgz | 207.6 KB | 2013-03-07 17:25 | 27 |
GapCloser | |||
bin | |||
r6 | |||
GapCloser-bin-v1.12-r6.tgz | 111.9 KB | 2013-01-11 18:56 | 105 |
src | |||
r6 | |||
GapCloser-src-v1.12-r6.tgz | 102.6 KB | 2013-01-11 18:53 | 454 |